Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01575.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1987
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.29


Found at i:464 original size:228 final size:228

Alignment explanation


    Indices: 63--1172  Score: 1391
    Period size: 228  Copynumber: 4.9  Consensus size: 228

         53 CCTCATTCAA

                           *        *  *              **    *  *     *  *  * 
         63 GATGCAAATTTTCGTCAAGACCCTCACCGGAAAGACCATCACATTGGAGGTGGAGAGTTCTGATA
          1 GATGCAAATTTTCGTGAAGACCCTGACTGGAAAGACCATCACCCTGGAAGTTGAGAGCTCAGACA

             *     *     *                 *        *  *              *   *  
        128 CTATTGACAATGTAAAGGCCAAGATTCAGGACAAGGAAGGCATCCCCCCAGACCAGCAAAGGTTG
         66 CGATTGATAATGTTAAGGCCAAGATTCAGGATAAGGAAGGAATTCCCCCAGACCAGCAGAGGCTG

              *  *     *                 ** *   *     *                      
        193 ATCTTCGCTGGTAAGCAACTTGAGGATGGCCGCA-CGTTGGCTGATTACAACATCCAGAAGGAGT
        131 ATTTTTGCTGGGAAGCAACTTGAGGATGGGAGGACCCTT-GCAGATTACAACATCCAGAAGGAGT

                *        *     *  *        *  
        257 CCACACTCCACTTAGTGCTTCGCCTCCGTGGAGG
        195 CCACCCTCCACTTGGTGCTCCGTCTCCGTGGCGG

            *           *  *     **       *        *  **    *  *     *     * 
        291 AATGCAAATTTTTGTTAAGACTTTGACTGGGAAGACCATTACATTGGAGGTAGAGAGTTCAGATA
          1 GATGCAAATTTTCGTGAAGACCCTGACTGGAAAGACCATCACCCTGGAAGTTGAGAGCTCAGACA

             *                 *  *        *     *                 *         
        356 CCATTGATAATGTTAAGGCAAAAATTCAGGACAAGGAGGGAATTCCCCCAGACCAACAGAGGCTG
         66 CGATTGATAATGTTAAGGCCAAGATTCAGGATAAGGAAGGAATTCCCCCAGACCAGCAGAGGCTG

                       *        *        ** *     *  *  *  *                 
        421 ATTTTTGCTGGTAAGCAACTGGAGGATGGCCGTACCCTGGCTGACTATAACATCCAGAAGGAGTC
        131 ATTTTTGCTGGGAAGCAACTTGAGGATGGGAGGACCCTTGCAGATTACAACATCCAGAAGGAGTC

                                    *     *  
        486 CACCCTCCACTTGGTGCTCCGTCTTCGTGGTGG
        196 CACCCTCCACTTGGTGCTCCGTCTCCGTGGCGG

            *     *     *        *  *     *                             *    
        519 TATGCAGATTTTTGTGAAGACACTTACTGGGAAGACCATCACCCTGGAAGTTGAGAGCTCTGACA
          1 GATGCAAATTTTCGTGAAGACCCTGACTGGAAAGACCATCACCCTGGAAGTTGAGAGCTCAGACA

             *  *                        *           *                       
        584 CAATCGATAATGTTAAGGCCAA-AGTTCAAGATAAGGAAGGTA-TCCCTCCAGACCAGCAGAGGC
         66 CGATTGATAATGTTAAGGCCAAGA-TTCAGGATAAGGAAGGAATTCCC-CCAGACCAGCAGAGGC

                *        *     *  *                                          
        647 TGATATTTGCTGGAAAGCAGCTAGAGGATGGGAGGACCCTTGCAGATTACAACATCCAGAAGGAG
        129 TGATTTTTGCTGGGAAGCAACTTGAGGATGGGAGGACCCTTGCAGATTACAACATCCAGAAGGAG

                             *                 
        712 TCCACCCTCCACTTGGTTCTCCGTCTCCGTGGCGG
        194 TCCACCCTCCACTTGGTGCTCCGTCTCCGTGGCGG

                                                                             
        747 GATGCAAATTTTCGTGAAGACCCTGACTGGAAAGACCATCACCCTGGAAGTTGAGAGCTCAGACA
          1 GATGCAAATTTTCGTGAAGACCCTGACTGGAAAGACCATCACCCTGGAAGTTGAGAGCTCAGACA

                                     *                    *                  
        812 CGATTGATAATGTTAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCAGACCAGCAGAGGCTG
         66 CGATTGATAATGTTAAGGCCAAGATTCAGGATAAGGAAGGAATTCCCCCAGACCAGCAGAGGCTG

                                   *                                         
        877 ATTTTTGCTGGGAAGCAACTTGAAGATGGGAGGACCCTTGCAGATTACAACATCCAGAAGGAGTC
        131 ATTTTTGCTGGGAAGCAACTTGAGGATGGGAGGACCCTTGCAGATTACAACATCCAGAAGGAGTC

                           *  *              
        942 CACCCTCCACTTGGTTCTTCGTCTCCGTGGCGG
        196 CACCCTCCACTTGGTGCTCCGTCTCCGTGGCGG

                                                                             
        975 GATGCAAATTTTCGTGAAGACCCTGACTGGAAAGACCATCACCCTGGAAGTTGAGAGCTCAGACA
          1 GATGCAAATTTTCGTGAAGACCCTGACTGGAAAGACCATCACCCTGGAAGTTGAGAGCTCAGACA

                                     *                                       
       1040 CGATTGATAATGTTAAGGCCAAGATCCAGGATAAGGAAGGAA-TCCCACCAGACCAGCAGAGGCT
         66 CGATTGATAATGTTAAGGCCAAGATTCAGGATAAGGAAGGAATTCCC-CCAGACCAGCAGAGGCT

                                    *                                      * 
       1104 GATTTTTGCTGGGAAGCAACTTGAAGATGGGAGGACCCTTGCAGATTACAACATCCAGAAGGAAT
        130 GATTTTTGCTGGGAAGCAACTTGAGGATGGGAGGACCCTTGCAGATTACAACATCCAGAAGGAGT

                
       1169 CCAC
        195 CCAC

       1173 TTTGCACCTG


Statistics
Matches: 783,  Mismatches: 93, Indels: 12
        0.88            0.10        0.01

Matches are distributed among these distances:
 227    8  0.01
 228  769  0.98
 229    6  0.01

ACGTcount: A:0.29, C:0.23, G:0.26, T:0.22


Consensus pattern (228 bp):   
GATGCAAATTTTCGTGAAGACCCTGACTGGAAAGACCATCACCCTGGAAGTTGAGAGCTCAGACA
CGATTGATAATGTTAAGGCCAAGATTCAGGATAAGGAAGGAATTCCCCCAGACCAGCAGAGGCTG
ATTTTTGCTGGGAAGCAACTTGAGGATGGGAGGACCCTTGCAGATTACAACATCCAGAAGGAGTC
CACCCTCCACTTGGTGCTCCGTCTCCGTGGCGG

Done.