Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01575.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 706

Length: 1178
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26


Found at i:464 original size:228 final size:228

Alignment explanation


    Indices: 64--944  Score: 983
    Period size: 228  Copynumber: 3.9  Consensus size: 228

         54 CTCATTCAAG

                       *  *      * *  *  *            *    *  *     *  *  *  
         64 ATGCAAATTTTCGTCAAGACCCTCACCGGAAAGACCATCACATTGGAGGTGGAGAGTTCTGATAC
          1 ATGCAAATTTTTGTGAAGACCTTGACTGGGAAGACCATCACACTGGAAGTTGAGAGCTCAGACAC

            *     *     *        *                 *  *              *   *   
        129 TATTGACAATGTAAAGGCCAAGATTCAGGACAAGGAAGGCATCCCCCCAGACCAGCAAAGGTTGA
         66 AATTGATAATGTTAAGGCCAAAATTCAGGACAAGGAAGGAATTCCCCCAGACCAGCAGAGGCTGA

             *  *                        * *  **    *                        
        194 TCTTCGCTGGTAAGCAACTTGAGGATGGCCGCACGTTGGCTGATTACAACATCCAGAAGGAGTCC
        131 TTTTTGCTGGTAAGCAACTTGAGGATGGCAGGACCCTGGCAGATTACAACATCCAGAAGGAGTCC

              *        *     *  *            
        259 ACACTCCACTTAGTGCTTCGCCTCCGTGGAGGA
        196 ACCCTCCACTTGGTGCTCCGTCTCCGTGGAGGA

                          *     *                 *   *    *  *     *     *  
        292 ATGCAAATTTTTGTTAAGACTTTGACTGGGAAGACCATTACATTGGAGGTAGAGAGTTCAGATAC
          1 ATGCAAATTTTTGTGAAGACCTTGACTGGGAAGACCATCACACTGGAAGTTGAGAGCTCAGACAC

            *                 *                 *                 *          
        357 CATTGATAATGTTAAGGCAAAAATTCAGGACAAGGAGGGAATTCCCCCAGACCAACAGAGGCTGA
         66 AATTGATAATGTTAAGGCCAAAATTCAGGACAAGGAAGGAATTCCCCCAGACCAGCAGAGGCTGA

                               *         * *        *  *  *                  
        422 TTTTTGCTGGTAAGCAACTGGAGGATGGCCGTACCCTGGCTGACTATAACATCCAGAAGGAGTCC
        131 TTTTTGCTGGTAAGCAACTTGAGGATGGCAGGACCCTGGCAGATTACAACATCCAGAAGGAGTCC

                                   *     *  *
        487 ACCCTCCACTTGGTGCTCCGTCTTCGTGGTGGT
        196 ACCCTCCACTTGGTGCTCCGTCTCCGTGGAGGA

                 *                                    *                 *    
        520 ATGCAGATTTTTGTGAAGACACTT-ACTGGGAAGACCATCACCCTGGAAGTTGAGAGCTCTGACA
          1 ATGCAAATTTTTGTGAAGAC-CTTGACTGGGAAGACCATCACACTGGAAGTTGAGAGCTCAGACA

                *                  *    *  *        *                        
        584 CAATCGATAATGTTAAGGCCAAAGTTCAAGATAAGGAAGGTA-TCCCTCCAGACCAGCAGAGGCT
         65 CAATTGATAATGTTAAGGCCAAAATTCAGGACAAGGAAGGAATTCCC-CCAGACCAGCAGAGGCT

               *        *     *  *        *        *                         
        648 GATATTTGCTGGAAAGCAGCTAGAGGATGGGAGGACCCTTGCAGATTACAACATCCAGAAGGAGT
        129 GATTTTTGCTGGTAAGCAACTTGAGGATGGCAGGACCCTGGCAGATTACAACATCCAGAAGGAGT

                            *              *  *
        713 CCACCCTCCACTTGGTTCTCCGTCTCCGTGGCGGG
        194 CCACCCTCCACTTGGTGCTCCGTCTCCGTGGAGGA

                       *         *       *           *                       
        748 ATGCAAATTTTCGTGAAGACCCTGACTGGAAAGACCATCACCCTGGAAGTTGAGAGCTCAGACAC
          1 ATGCAAATTTTTGTGAAGACCTTGACTGGGAAGACCATCACACTGGAAGTTGAGAGCTCAGACAC

            *                    *  *     *              *                   
        813 GATTGATAATGTTAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCAGACCAGCAGAGGCTGA
         66 AATTGATAATGTTAAGGCCAAAATTCAGGACAAGGAAGGAATTCCCCCAGACCAGCAGAGGCTGA

                      *           *     *        *                       *   
        878 TTTTTGCTGGGAAGCAACTTGAAGATGGGAGGACCCTTGCAGATTACAACATCCAGAAGGAATCC
        131 TTTTTGCTGGTAAGCAACTTGAGGATGGCAGGACCCTGGCAGATTACAACATCCAGAAGGAGTCC

              
        943 AC
        196 AC

        945 TTTGCACCTG


Statistics
Matches: 559,  Mismatches: 90, Indels: 8
        0.85            0.14        0.01

Matches are distributed among these distances:
 227    6  0.01
 228  548  0.98
 229    5  0.01

ACGTcount: A:0.30, C:0.23, G:0.26, T:0.22


Consensus pattern (228 bp):   
ATGCAAATTTTTGTGAAGACCTTGACTGGGAAGACCATCACACTGGAAGTTGAGAGCTCAGACAC
AATTGATAATGTTAAGGCCAAAATTCAGGACAAGGAAGGAATTCCCCCAGACCAGCAGAGGCTGA
TTTTTGCTGGTAAGCAACTTGAGGATGGCAGGACCCTGGCAGATTACAACATCCAGAAGGAGTCC
ACCCTCCACTTGGTGCTCCGTCTCCGTGGAGGA
Done.