Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00846.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 272

Length: 454
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.32


Found at i:16 original size:8 final size:8

Alignment explanation


    Indices: 4--32  Score: 51
    Period size: 8  Copynumber: 3.8  Consensus size: 8

          1 GAA

                    
          4 TTTTTTAT
          1 TTTTTTAT

                    
         12 TTTTTTA-
          1 TTTTTTAT

                    
         19 TTTTTTAT
          1 TTTTTTAT

                  
         27 TTTTTT
          1 TTTTTT

         33 GAGAAATAAG


Statistics
Matches: 20,  Mismatches: 0, Indels: 2
        0.91            0.00        0.09

Matches are distributed among these distances:
   7    7  0.35
   8   13  0.65

ACGTcount: A:0.10, C:0.00, G:0.00, T:0.90


Consensus pattern (8 bp):   
TTTTTTAT

Found at i:23 original size:15 final size:15

Alignment explanation


    Indices: 3--32  Score: 60
    Period size: 15  Copynumber: 2.0  Consensus size: 15

          1 GA

                           
          3 ATTTTTTATTTTTTT
          1 ATTTTTTATTTTTTT

                           
         18 ATTTTTTATTTTTTT
          1 ATTTTTTATTTTTTT

         33 GAGAAATAAG


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.13, C:0.00, G:0.00, T:0.87


Consensus pattern (15 bp):   
ATTTTTTATTTTTTT
Done.