Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01589.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2066
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.27


Found at i:125 original size:2 final size:2

Alignment explanation


    Indices: 118--146  Score: 58
    Period size: 2  Copynumber: 14.5  Consensus size: 2

        108 AATTGCCATC

                                                       
        118 CT CT CT CT CT CT CT CT CT CT CT CT CT CT C
          1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT C

        147 ACGCACGCGC


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   27  1.00

ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48


Consensus pattern (2 bp):   
CT

Found at i:1389 original size:114 final size:114

Alignment explanation


    Indices: 1185--1466  Score: 354
    Period size: 114  Copynumber: 2.5  Consensus size: 114

       1175 TTGCAATGCA

                            **      *                                    *   
       1185 TCAACAACAACTAGCTGCGCTAGCTCAGCAACAGTCCCTTCTCATGGCTGCTGCAGCTAAATCTG
          1 TCAACAACAACTAGCTATGCTAGCACAGCAACAGTCCCTTCTCATGGCTGCTGCAGCTAAAGCTG

              *       *         *            *       *          
       1250 CTTCTGGAAATGCTCAACAGTCTCCATCCAATGGCA-C-CATG-ATACCCAC
         66 CTCCTGGAAACGCTCAACAGCCTCCAT-CAA--CCACCACAAGCATACCCAC

                               *                      *                      
       1299 TCAACAACAACTAGCTATGTTAGCACAGCAACAGTCCCTTCTTATGGCTGCTGCAGCTAAAGCTG
          1 TCAACAACAACTAGCTATGCTAGCACAGCAACAGTCCCTTCTCATGGCTGCTGCAGCTAAAGCTG

                        *                            *       
       1364 CTCCTGGAAACGGTCAACAGCCTCCATCAACCACCACAAGCTTACCCAC
         66 CTCCTGGAAACGCTCAACAGCCTCCATCAACCACCACAAGCATACCCAC

                            *       *  *           *        *     
       1413 TCAACAACAACTAGCTTTGCTAGCGCATCAACAGTCCCTCCTCATGGCGGCTGC
          1 TCAACAACAACTAGCTATGCTAGCACAGCAACAGTCCCTTCTCATGGCTGCTGC

       1467 TGCTGGAAAT


Statistics
Matches: 145,  Mismatches: 20, Indels: 6
        0.85            0.12        0.04

Matches are distributed among these distances:
 111    2  0.01
 112    1  0.01
 113    6  0.04
 114  136  0.94

ACGTcount: A:0.28, C:0.34, G:0.17, T:0.22


Consensus pattern (114 bp):   
TCAACAACAACTAGCTATGCTAGCACAGCAACAGTCCCTTCTCATGGCTGCTGCAGCTAAAGCTG
CTCCTGGAAACGCTCAACAGCCTCCATCAACCACCACAAGCATACCCAC
Done.