Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01591.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 454

Length: 757
ACGTcount: A:0.35, C:0.18, G:0.24, T:0.24


Found at i:21 original size:10 final size:10

Alignment explanation


    Indices: 6--38  Score: 50
    Period size: 10  Copynumber: 3.4  Consensus size: 10

          1 GTACC

                      
          6 AAAAAAAAA-
          1 AAAAAAAAAG

                      
         15 AAAAAAAAAG
          1 AAAAAAAAAG

               *      
         25 AAAGAAAAAG
          1 AAAAAAAAAG

                
         35 AAAA
          1 AAAA

         39 TGGGGATATG


Statistics
Matches: 21,  Mismatches: 2, Indels: 1
        0.88            0.08        0.04

Matches are distributed among these distances:
   9    9  0.43
  10   12  0.57

ACGTcount: A:0.91, C:0.00, G:0.09, T:0.00


Consensus pattern (10 bp):   
AAAAAAAAAG
Done.