Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01595.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3047
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.32


Found at i:2040 original size:18 final size:18

Alignment explanation


    Indices: 2019--2061  Score: 59
    Period size: 18  Copynumber: 2.4  Consensus size: 18

       2009 TCCGGTGAGA

                              
       2019 ATGATGAGGAGTTATCAG
          1 ATGATGAGGAGTTATCAG

                  **     *    
       2037 ATGATGCTGAGTTTTCAG
          1 ATGATGAGGAGTTATCAG

                   
       2055 ATGATGA
          1 ATGATGA

       2062 AAAGGAGGCC


Statistics
Matches: 21,  Mismatches: 4, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  18   21  1.00

ACGTcount: A:0.30, C:0.07, G:0.30, T:0.33


Consensus pattern (18 bp):   
ATGATGAGGAGTTATCAG
Done.