Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01598.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4535
ACGTcount: A:0.31, C:0.13, G:0.21, T:0.35


Found at i:1967 original size:6 final size:6

Alignment explanation


    Indices: 1951--1988  Score: 58
    Period size: 6  Copynumber: 6.2  Consensus size: 6

       1941 GTTTCTCAAA

                   *                                    
       1951 AAAATG GAAATG AAAATG AAAATG AAAATG AGAAATG A
          1 AAAATG AAAATG AAAATG AAAATG AAAATG A-AAATG A

       1989 TTTATTTGTA


Statistics
Matches: 29,  Mismatches: 2, Indels: 1
        0.91            0.06        0.03

Matches are distributed among these distances:
   6   23  0.79
   7    6  0.21

ACGTcount: A:0.63, C:0.00, G:0.21, T:0.16


Consensus pattern (6 bp):   
AAAATG

Done.