Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01606.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 598

Length: 997
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28


Found at i:389 original size:9 final size:9

Alignment explanation


    Indices: 347--473  Score: 139
    Period size: 9  Copynumber: 14.1  Consensus size: 9

        337 ACCATTTCCT

                 *   
        347 CAAATTCCA
          1 CAAATCCCA

            *        
        356 GAAATCCCA
          1 CAAATCCCA

                  *   
        365 -AGAATTCCA
          1 CA-AATCCCA

            *        
        374 GAAATCCCA
          1 CAAATCCCA

                     
        383 CAAATCCCA
          1 CAAATCCCA

              *      
        392 CAGATCCCA
          1 CAAATCCCA

                     
        401 CAAATCCCA
          1 CAAATCCCA

                 *   
        410 CAAATTCCA
          1 CAAATCCCA

             *       
        419 CTAATCCCA
          1 CAAATCCCA

              *      
        428 CAGATCCCA
          1 CAAATCCCA

               *     
        437 CAAGTCCCA
          1 CAAATCCCA

              *      
        446 CAGATCCCA
          1 CAAATCCCA

               *     
        455 CAAGTCCCA
          1 CAAATCCCA

                     
        464 CAAATCCCA
          1 CAAATCCCA

             
        473 C
          1 C

        474 TAATGCCAGG


Statistics
Matches: 97,  Mismatches: 19, Indels: 4
        0.81            0.16        0.03

Matches are distributed among these distances:
   8    1  0.01
   9   95  0.98
  10    1  0.01

ACGTcount: A:0.39, C:0.40, G:0.06, T:0.14


Consensus pattern (9 bp):   
CAAATCCCA

Done.