Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00851.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4024
ACGTcount: A:0.28, C:0.16, G:0.21, T:0.35


Found at i:753 original size:28 final size:28

Alignment explanation


    Indices: 713--769  Score: 114
    Period size: 28  Copynumber: 2.0  Consensus size: 28

        703 TGTATTACAG

                                        
        713 TTATAGTCGCCGGCGCTATTTAGAATTT
          1 TTATAGTCGCCGGCGCTATTTAGAATTT

                                        
        741 TTATAGTCGCCGGCGCTATTTAGAATTT
          1 TTATAGTCGCCGGCGCTATTTAGAATTT

             
        769 T
          1 T

        770 CTCTCTGATT


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  28   29  1.00

ACGTcount: A:0.21, C:0.18, G:0.21, T:0.40


Consensus pattern (28 bp):   
TTATAGTCGCCGGCGCTATTTAGAATTT

Found at i:960 original size:33 final size:33

Alignment explanation


    Indices: 923--989  Score: 116
    Period size: 33  Copynumber: 2.0  Consensus size: 33

        913 GATGGAAATG

                                  *   *      
        923 TACTGTGTATTTGTTTAAACTATGCATGAGTGC
          1 TACTGTGTATTTGTTTAAACTAAGCACGAGTGC

                                             
        956 TACTGTGTATTTGTTTAAACTAAGCACGAGTGC
          1 TACTGTGTATTTGTTTAAACTAAGCACGAGTGC

             
        989 T
          1 T

        990 GCTTTCATTA


Statistics
Matches: 32,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  33   32  1.00

ACGTcount: A:0.25, C:0.13, G:0.21, T:0.40


Consensus pattern (33 bp):   
TACTGTGTATTTGTTTAAACTAAGCACGAGTGC
Done.