Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01618.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2904
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.30


Found at i:1323 original size:27 final size:28

Alignment explanation


    Indices: 1293--1349  Score: 89
    Period size: 30  Copynumber: 2.0  Consensus size: 28

       1283 TTTCCGCTGC

                                        
       1293 AGTCAAGTCTTTG-CTCTTTTTGTCACT
          1 AGTCAAGTCTTTGTCTCTTTTTGTCACT

                                          
       1320 AGTCAAGTCTTTGCTTCTCTTTTTGTCACT
          1 AGTCAAGTCTTTG--TCTCTTTTTGTCACT

       1350 CGCCGGAAAT


Statistics
Matches: 27,  Mismatches: 0, Indels: 3
        0.90            0.00        0.10

Matches are distributed among these distances:
  27   13  0.48
  30   14  0.52

ACGTcount: A:0.14, C:0.23, G:0.14, T:0.49


Consensus pattern (28 bp):   
AGTCAAGTCTTTGTCTCTTTTTGTCACT

Found at i:2364 original size:11 final size:11

Alignment explanation


    Indices: 2324--2364  Score: 50
    Period size: 12  Copynumber: 3.8  Consensus size: 11

       2314 AAAAGCAGCC

                *      
       2324 AAAGCAGCT-A
          1 AAAGAAGCTGA

                       
       2334 AAAG-AGCTGA
          1 AAAGAAGCTGA

                        
       2344 AAAGGAAGCTGA
          1 AAA-GAAGCTGA

                     
       2356 AAAGAAGCT
          1 AAAGAAGCT

       2365 CAAGGAGCGT


Statistics
Matches: 28,  Mismatches: 0, Indels: 5
        0.85            0.00        0.15

Matches are distributed among these distances:
   9    4  0.14
  10    8  0.29
  11    7  0.25
  12    9  0.32

ACGTcount: A:0.51, C:0.12, G:0.27, T:0.10


Consensus pattern (11 bp):   
AAAGAAGCTGA
Done.