Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01618.N3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2767
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.29


Found at i:2227 original size:11 final size:11

Alignment explanation


    Indices: 2187--2227  Score: 50
    Period size: 12  Copynumber: 3.8  Consensus size: 11

       2177 AAAAGCAGCC

                *      
       2187 AAAGCAGCT-A
          1 AAAGAAGCTGA

                       
       2197 AAAG-AGCTGA
          1 AAAGAAGCTGA

                        
       2207 AAAGGAAGCTGA
          1 AAA-GAAGCTGA

                     
       2219 AAAGAAGCT
          1 AAAGAAGCT

       2228 CAAGGAGCGT


Statistics
Matches: 28,  Mismatches: 0, Indels: 5
        0.85            0.00        0.15

Matches are distributed among these distances:
   9    4  0.14
  10    8  0.29
  11    7  0.25
  12    9  0.32

ACGTcount: A:0.51, C:0.12, G:0.27, T:0.10


Consensus pattern (11 bp):   
AAAGAAGCTGA
Done.