Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01622.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 694

Length: 1158
ACGTcount: A:0.24, C:0.27, G:0.18, T:0.31


Found at i:570 original size:54 final size:54

Alignment explanation


    Indices: 488--613  Score: 236
    Period size: 54  Copynumber: 2.3  Consensus size: 54

        478 CTTATCACCA

                                                                   
        488 TGGTCC-AGTTGCAAAGCCACCCACAGGATCATCTCCGGTTCCTGCTCTGGCTCC
          1 TGGTCCTA-TTGCAAAGCCACCCACAGGATCATCTCCGGTTCCTGCTCTGGCTCC

                                                                  
        542 TGGTCCTATTGCAAAGCCACCCACAGGATCATCTCCGGTTCCTGCTCTGGCTCC
          1 TGGTCCTATTGCAAAGCCACCCACAGGATCATCTCCGGTTCCTGCTCTGGCTCC

                              
        596 TGGTCCTATTGCAAAGCC
          1 TGGTCCTATTGCAAAGCC

        614 TCCTACAGCA


Statistics
Matches: 71,  Mismatches: 0, Indels: 2
        0.97            0.00        0.03

Matches are distributed among these distances:
  54   70  0.99
  55    1  0.01

ACGTcount: A:0.17, C:0.36, G:0.21, T:0.25


Consensus pattern (54 bp):   
TGGTCCTATTGCAAAGCCACCCACAGGATCATCTCCGGTTCCTGCTCTGGCTCC

Found at i:650 original size:54 final size:54

Alignment explanation


    Indices: 488--650  Score: 168
    Period size: 54  Copynumber: 3.0  Consensus size: 54

        478 CTTATCACCA

                                       *    *          *  * *      
        488 TGGTCC-AGTTGCAAAGCCACCCACAGGATCATCTCCGGTTCCTGCTCTGGCTCC
          1 TGGTCCTA-TTGCAAAGCCACCCACAGCATCAACTCCGGTTCCAGCACAGGCTCC

                                      *    *          *  * *      
        542 TGGTCCTATTGCAAAGCCACCCACAGGATCATCTCCGGTTCCTGCTCTGGCTCC
          1 TGGTCCTATTGCAAAGCCACCCACAGCATCAACTCCGGTTCCAGCACAGGCTCC

                              *  *       *                    *    
        596 TGGTCCTATTGCAAAGCCTCCTACAGCATTAACTCCAGG-TCCAGCACAGTCTCC
          1 TGGTCCTATTGCAAAGCCACCCACAGCATCAACTCC-GGTTCCAGCACAGGCTCC

             
        650 T
          1 T

        651 TATCACCATG


Statistics
Matches: 98,  Mismatches: 9, Indels: 4
        0.88            0.08        0.04

Matches are distributed among these distances:
  54   95  0.97
  55    3  0.03

ACGTcount: A:0.19, C:0.36, G:0.20, T:0.25


Consensus pattern (54 bp):   
TGGTCCTATTGCAAAGCCACCCACAGCATCAACTCCGGTTCCAGCACAGGCTCC
Done.