Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01631.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4762
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.30


Found at i:2090 original size:30 final size:30

Alignment explanation


    Indices: 2056--2151  Score: 138
    Period size: 30  Copynumber: 3.2  Consensus size: 30

       2046 CCTCCACCTC

                                     *    
       2056 CTGGTGCTCCTCCACCACCTCCTCCGAAAG
          1 CTGGTGCTCCTCCACCACCTCCTCCAAAAG

                   *     *         * *    
       2086 CTGGTGCCCCTCCGCCACCTCCTTCTAAAG
          1 CTGGTGCTCCTCCACCACCTCCTCCAAAAG

                *                         
       2116 CTGGCGCTCCTCCACCACCTCCTCCAAAAG
          1 CTGGTGCTCCTCCACCACCTCCTCCAAAAG

                  
       2146 CTGGTG
          1 CTGGTG

       2152 GTGGTCCTAG


Statistics
Matches: 56,  Mismatches: 10, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  30   56  1.00

ACGTcount: A:0.16, C:0.46, G:0.18, T:0.21


Consensus pattern (30 bp):   
CTGGTGCTCCTCCACCACCTCCTCCAAAAG
Done.