Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01643.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 493

Length: 822
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.26


Found at i:668 original size:32 final size:32

Alignment explanation


    Indices: 627--689  Score: 117
    Period size: 32  Copynumber: 2.0  Consensus size: 32

        617 GCTCCCTCTC

                                            
        627 TTCTGTCATCCGATGGTTCATGTCTTGTACTA
          1 TTCTGTCATCCGATGGTTCATGTCTTGTACTA

                               *           
        659 TTCTGTCATCCGATGGTTCTTGTCTTGTACT
          1 TTCTGTCATCCGATGGTTCATGTCTTGTACT

        690 CTGTACCACT


Statistics
Matches: 30,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  32   30  1.00

ACGTcount: A:0.13, C:0.22, G:0.19, T:0.46


Consensus pattern (32 bp):   
TTCTGTCATCCGATGGTTCATGTCTTGTACTA
Done.