Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01651.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4082
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.32


Found at i:1085 original size:18 final size:18

Alignment explanation


    Indices: 1029--1087  Score: 55
    Period size: 18  Copynumber: 3.2  Consensus size: 18

       1019 ATCCTAAGGT

                         *    
       1029 CATTTTCTTTCTCCTGGA
          1 CATTTTCTTTCTCATGGA

                ** *     *     
       1047 CATTAGCATTCATGATGGA
          1 CATTTTCTTTC-TCATGGA

                         *    
       1066 CATTTTCTTTCTCTTGGA
          1 CATTTTCTTTCTCATGGA

                
       1084 CATT
          1 CATT

       1088 GTCTCTGGTA


Statistics
Matches: 30,  Mismatches: 10, Indels: 2
        0.71            0.24        0.05

Matches are distributed among these distances:
  18   17  0.57
  19   13  0.43

ACGTcount: A:0.19, C:0.22, G:0.14, T:0.46


Consensus pattern (18 bp):   
CATTTTCTTTCTCATGGA
Done.