Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01658.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3286
ACGTcount: A:0.27, C:0.17, G:0.21, T:0.35


Found at i:586 original size:17 final size:17

Alignment explanation


    Indices: 566--614  Score: 55
    Period size: 17  Copynumber: 2.9  Consensus size: 17

        556 GTCATTTTTT

                             
        566 TGATTGGATGTTTTTGA
          1 TGATTGGATGTTTTTGA

                   * *      * 
        583 TGA-TGGGTTTTTATTTA
          1 TGATTGGATGTTT-TTGA

                           
        600 TGATTGGATGTTTTT
          1 TGATTGGATGTTTTT

        615 ATTTATGCCT


Statistics
Matches: 25,  Mismatches: 5, Indels: 4
        0.74            0.15        0.12

Matches are distributed among these distances:
  16    7  0.28
  17   11  0.44
  18    7  0.28

ACGTcount: A:0.16, C:0.00, G:0.27, T:0.57


Consensus pattern (17 bp):   
TGATTGGATGTTTTTGA
Done.