Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01659.N4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2589
ACGTcount: A:0.37, C:0.17, G:0.18, T:0.28


Found at i:2396 original size:3 final size:3

Alignment explanation


    Indices: 2388--2444  Score: 114
    Period size: 3  Copynumber: 19.0  Consensus size: 3

       2378 CATGGCATTG

                                                                           
       2388 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
          1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA

                       
       2436 TAA TAA TAA
          1 TAA TAA TAA

       2445 AGGGAGAGAT


Statistics
Matches: 54,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   54  1.00

ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33


Consensus pattern (3 bp):   
TAA

Done.