Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01666.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3639
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28


Found at i:2969 original size:3 final size:3

Alignment explanation


    Indices: 2955--2984  Score: 53
    Period size: 3  Copynumber: 10.3  Consensus size: 3

       2945 CTATAGCTTT

                                                     
       2955 TTA TTA TT- TTA TTA TTA TTA TTA TTA TTA T
          1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T

       2985 CAAACTAAGG


Statistics
Matches: 26,  Mismatches: 0, Indels: 2
        0.93            0.00        0.07

Matches are distributed among these distances:
   2    2  0.08
   3   24  0.92

ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70


Consensus pattern (3 bp):   
TTA

Done.