Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01673.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 717

Length: 1195
ACGTcount: A:0.27, C:0.21, G:0.16, T:0.35


Found at i:98 original size:57 final size:57

Alignment explanation


    Indices: 1--110  Score: 157
    Period size: 57  Copynumber: 1.9  Consensus size: 57

                      *                        *            *        
          1 GTCTGAACGCCTTTGCCTTATCCTCTCAAACTCATGGCGAACCTGCTCTGAAAAGAT
          1 GTCTGAACGCATTTGCCTTATCCTCTCAAACTCATAGCGAACCTGCTCCGAAAAGAT

                 *                *    *    *                    
         58 GTCTGGACGCATTTGCCTTATCTTCTCTAACTTATAGCGAACCTGCTCCGAAA
          1 GTCTGAACGCATTTGCCTTATCCTCTCAAACTCATAGCGAACCTGCTCCGAAA

        111 TGCCATTCTC


Statistics
Matches: 46,  Mismatches: 7, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  57   46  1.00

ACGTcount: A:0.24, C:0.29, G:0.17, T:0.30


Consensus pattern (57 bp):   
GTCTGAACGCATTTGCCTTATCCTCTCAAACTCATAGCGAACCTGCTCCGAAAAGAT
Done.