Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01693.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2184
ACGTcount: A:0.30, C:0.16, G:0.17, T:0.37


Found at i:995 original size:16 final size:15

Alignment explanation


    Indices: 969--998  Score: 51
    Period size: 16  Copynumber: 1.9  Consensus size: 15

        959 AAAAAAAAAA

                           
        969 GAAAAAGAAAGAAAG
          1 GAAAAAGAAAGAAAG

                           
        984 GAAAACAGAAAGAAA
          1 GAAAA-AGAAAGAAA

        999 ATCTCATTTA


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  15    5  0.36
  16    9  0.64

ACGTcount: A:0.73, C:0.03, G:0.23, T:0.00


Consensus pattern (15 bp):   
GAAAAAGAAAGAAAG
Done.