Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01700.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3647
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.31


Found at i:482 original size:26 final size:26

Alignment explanation


    Indices: 446--529  Score: 134
    Period size: 26  Copynumber: 3.2  Consensus size: 26

        436 CATGAAATTC

                             *        
        446 TTATCATGAAACATTTATCTAACCCA
          1 TTATCATGAAACATTTACCTAACCCA

                                      
        472 TTATCATGAAACATTTACCTAACCCA
          1 TTATCATGAAACATTTACCTAACCCA

                                     * 
        498 TTATCAT-AGAACATTTACCTAACCTA
          1 TTATCATGA-AACATTTACCTAACCCA

                  
        524 TTATCA
          1 TTATCA

        530 ATTTGTATAA


Statistics
Matches: 55,  Mismatches: 2, Indels: 2
        0.93            0.03        0.03

Matches are distributed among these distances:
  25    1  0.02
  26   54  0.98

ACGTcount: A:0.38, C:0.24, G:0.04, T:0.35


Consensus pattern (26 bp):   
TTATCATGAAACATTTACCTAACCCA
Done.