Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga13g01714.F5
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3543
ACGTcount: A:0.29, C:0.16, G:0.22, T:0.33
Found at i:900 original size:77 final size:77
Alignment explanation
Indices: 817--970 Score: 281
Period size: 77 Copynumber: 2.0 Consensus size: 77
807 TTAATTCATG
* *
817 TGTGGTTAGCTTTTAAAATTAGTTGCAGTTGAATATGAGTATGGTTTTCCTTTTTCCTTTTGTAT
1 TGTGGTTAGCTTTTAAAATTAGTTGCAGTTGAATATGAATATGATTTTCCTTTTTCCTTTTGTAT
882 TTTAGTATTATC
66 TTTAGTATTATC
*
894 TGTGGTTAGCTTTTAAAATTAGTTGCAGTTGAATATGAATATGATTTTCTTTTTTCCTTTTGTAT
1 TGTGGTTAGCTTTTAAAATTAGTTGCAGTTGAATATGAATATGATTTTCCTTTTTCCTTTTGTAT
959 TTTAGTATTATC
66 TTTAGTATTATC
971 CAAGTCTCAA
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
77 74 1.00
ACGTcount: A:0.22, C:0.08, G:0.17, T:0.53
Consensus pattern (77 bp):
TGTGGTTAGCTTTTAAAATTAGTTGCAGTTGAATATGAATATGATTTTCCTTTTTCCTTTTGTAT
TTTAGTATTATC
Found at i:2926 original size:3 final size:3
Alignment explanation
Indices: 2918--2944 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
2908 ATATGCTTCC
2918 CAG CAG CAG CAG CAG CAG CAG CAG CAG
1 CAG CAG CAG CAG CAG CAG CAG CAG CAG
2945 GAGATTTTAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.33, G:0.33, T:0.00
Consensus pattern (3 bp):
CAG
Done.