Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01715.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2202
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30


Found at i:15 original size:6 final size:6

Alignment explanation


    Indices: 2--31  Score: 51
    Period size: 6  Copynumber: 5.0  Consensus size: 6

          1 A

                     *                        
          2 CCCTCC CCGTCC CCCTCC CCCTCC CCCTCC
          1 CCCTCC CCCTCC CCCTCC CCCTCC CCCTCC

         32 TACTCTTTTG


Statistics
Matches: 22,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
   6   22  1.00

ACGTcount: A:0.00, C:0.80, G:0.03, T:0.17


Consensus pattern (6 bp):   
CCCTCC

Done.