Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00861.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6593
ACGTcount: A:0.29, C:0.17, G:0.22, T:0.31


Found at i:764 original size:23 final size:23

Alignment explanation


    Indices: 738--786  Score: 98
    Period size: 23  Copynumber: 2.1  Consensus size: 23

        728 AAAAATACTT

                                   
        738 ACCCTGAAAAATAATTAAAACTC
          1 ACCCTGAAAAATAATTAAAACTC

                                   
        761 ACCCTGAAAAATAATTAAAACTC
          1 ACCCTGAAAAATAATTAAAACTC

               
        784 ACC
          1 ACC

        787 ATTTTTATTG


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  23   26  1.00

ACGTcount: A:0.51, C:0.24, G:0.04, T:0.20


Consensus pattern (23 bp):   
ACCCTGAAAAATAATTAAAACTC
Done.