Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01732.F6

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4001
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33


Found at i:2480 original size:191 final size:195

Alignment explanation


    Indices: 2146--2534  Score: 615
    Period size: 191  Copynumber: 2.0  Consensus size: 195

       2136 ATTTAGATTA

                                                                             
       2146 TAAAAGCTATTTAATTCTAGCATTTGAGTACACCAAAACTTGCATACTAGTTAAATGATTACTTA
          1 TAAAAGCTATTTAATTCTAGCATTTGAGTACACCAAAACTTGCATAC-AG-T-AA-GATTACTTA

                *    *           *                                     *     
       2211 AATGTTAGTTTCTTGAGAAGGGCATGTTGGTTCTTTTACAGAAGCAACTTCACTTACTGTTTCTT
         62 AATGGTAGTGTCTTGAGAAGGACATGTTGGTTCTTTTACAGAAGCAACTTCACTTACTGGTTCTT

                  *                             *                            
       2276 AAGCAGTTCCTGACCCTGAGCATTAAGTGCACTTGGGTGTTTAAAACTCCAGATGGCCAATTTCA
        127 AAGCAGCTCCTGACCCTGAGCATTAAGTGCACTTGGATGTTTAAAACTCCAGATGGCCAATTTCA

                
       2341 GGGT
        192 GGGT

                                                                 *      *    
       2345 TAAAAGCTATTTAATTCTAGCATTTGAGTACACCAAAACTTGCATA-A-T-A-CTTACTTTAATG
          1 TAAAAGCTATTTAATTCTAGCATTTGAGTACACCAAAACTTGCATACAGTAAGATTACTTAAATG

                                                               *             
       2406 GTAGTGTCTTGAGAAGGACATGTTGGTTCTTTTACAGAAGCAACTTCACTTGCTGGTTCTTAAGC
         66 GTAGTGTCTTGAGAAGGACATGTTGGTTCTTTTACAGAAGCAACTTCACTTACTGGTTCTTAAGC

                                 *                    *                     
       2471 AGCTCCTGACCCTGAGCATTATGTGCACTTGGATGTTTAAAATTCCAGATGGCCAATTTCAGGG
        131 AGCTCCTGACCCTGAGCATTAAGTGCACTTGGATGTTTAAAACTCCAGATGGCCAATTTCAGGG

       2535 ATTCCCATTT


Statistics
Matches: 179,  Mismatches: 11, Indels: 8
        0.90            0.06        0.04

Matches are distributed among these distances:
 191  130  0.73
 193    1  0.01
 195    1  0.01
 197    1  0.01
 199   46  0.26

ACGTcount: A:0.29, C:0.18, G:0.19, T:0.34


Consensus pattern (195 bp):   
TAAAAGCTATTTAATTCTAGCATTTGAGTACACCAAAACTTGCATACAGTAAGATTACTTAAATG
GTAGTGTCTTGAGAAGGACATGTTGGTTCTTTTACAGAAGCAACTTCACTTACTGGTTCTTAAGC
AGCTCCTGACCCTGAGCATTAAGTGCACTTGGATGTTTAAAACTCCAGATGGCCAATTTCAGGGT
Done.