Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01742.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3561
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.34


Found at i:1964 original size:17 final size:17

Alignment explanation


    Indices: 1942--1975  Score: 50
    Period size: 17  Copynumber: 2.0  Consensus size: 17

       1932 ATCCTTATAT

                       *     
       1942 AAGAAAATAAGCAAATA
          1 AAGAAAATAAGAAAATA

                  *          
       1959 AAGAAACTAAGAAAATA
          1 AAGAAAATAAGAAAATA

       1976 GAAATATGCT


Statistics
Matches: 15,  Mismatches: 2, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  17   15  1.00

ACGTcount: A:0.71, C:0.06, G:0.12, T:0.12


Consensus pattern (17 bp):   
AAGAAAATAAGAAAATA
Done.