Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01751.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3316
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30


Found at i:76 original size:24 final size:25

Alignment explanation


    Indices: 36--86  Score: 77
    Period size: 24  Copynumber: 2.1  Consensus size: 25

         26 AATCCCTCTG

                        *            
         36 TTCGGATCCCTCGGTTTCTCCCACT
          1 TTCGGATCCCTCCGTTTCTCCCACT

                                  *  
         61 TTCGGAT-CCTCCGTTTCTCCCTCT
          1 TTCGGATCCCTCCGTTTCTCCCACT

              
         85 TT
          1 TT

         87 TTCGCCGGTG


Statistics
Matches: 24,  Mismatches: 2, Indels: 1
        0.89            0.07        0.04

Matches are distributed among these distances:
  24   17  0.71
  25    7  0.29

ACGTcount: A:0.06, C:0.39, G:0.14, T:0.41


Consensus pattern (25 bp):   
TTCGGATCCCTCCGTTTCTCCCACT
Done.