Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01753.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1843
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.29


Found at i:1703 original size:25 final size:25

Alignment explanation


    Indices: 1669--1725  Score: 114
    Period size: 25  Copynumber: 2.3  Consensus size: 25

       1659 AAAGATGATT

                                     
       1669 TAATTTTAATTCCAACCACTCATGC
          1 TAATTTTAATTCCAACCACTCATGC

                                     
       1694 TAATTTTAATTCCAACCACTCATGC
          1 TAATTTTAATTCCAACCACTCATGC

                   
       1719 TAATTTT
          1 TAATTTT

       1726 TCCGTTAAAT


Statistics
Matches: 32,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  25   32  1.00

ACGTcount: A:0.32, C:0.25, G:0.04, T:0.40


Consensus pattern (25 bp):   
TAATTTTAATTCCAACCACTCATGC
Done.