Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01765.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 749

Length: 1249
ACGTcount: A:0.30, C:0.18, G:0.27, T:0.25


Found at i:517 original size:12 final size:12

Alignment explanation


    Indices: 500--529  Score: 60
    Period size: 12  Copynumber: 2.5  Consensus size: 12

        490 ACTCGGGGAA

                        
        500 GAGGCCGTGGTC
          1 GAGGCCGTGGTC

                        
        512 GAGGCCGTGGTC
          1 GAGGCCGTGGTC

                  
        524 GAGGCC
          1 GAGGCC

        530 AAGGTAGTAC


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   18  1.00

ACGTcount: A:0.10, C:0.27, G:0.50, T:0.13


Consensus pattern (12 bp):   
GAGGCCGTGGTC
Done.