Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01768.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 924

Length: 1541
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.29


Found at i:1032 original size:23 final size:23

Alignment explanation


    Indices: 963--1033  Score: 76
    Period size: 23  Copynumber: 3.1  Consensus size: 23

        953 CGGCCGAAAC

                 *                 
        963 CAGTGGGCAACCTTCCAATCCCT
          1 CAGTGAGCAACCTTCCAATCCCT

               *   *                 
        986 CATCTGAACAAGCCTT--AAT-CCT
          1 CA-GTGAGCAA-CCTTCCAATCCCT

                                   
       1008 CAGTGAGCAACCTTCCAATCCCT
          1 CAGTGAGCAACCTTCCAATCCCT

               
       1031 CAG
          1 CAG

       1034 CTGATCGAGG


Statistics
Matches: 38,  Mismatches: 5, Indels: 10
        0.72            0.09        0.19

Matches are distributed among these distances:
  20    4  0.11
  21    6  0.16
  22    8  0.21
  23   11  0.29
  24    5  0.13
  25    4  0.11

ACGTcount: A:0.27, C:0.37, G:0.14, T:0.23


Consensus pattern (23 bp):   
CAGTGAGCAACCTTCCAATCCCT
Done.