Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01781.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3687
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32


Found at i:141 original size:6 final size:6

Alignment explanation


    Indices: 134--174  Score: 73
    Period size: 6  Copynumber: 6.8  Consensus size: 6

        124 CCAACAGAAA

                 *                                         
        134 CAACAA CAACAG CAACAG CAACAG CAACAG CAACAG CAACA
          1 CAACAG CAACAG CAACAG CAACAG CAACAG CAACAG CAACA

        175 AATGCTTCTC


Statistics
Matches: 34,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
   6   34  1.00

ACGTcount: A:0.54, C:0.34, G:0.12, T:0.00


Consensus pattern (6 bp):   
CAACAG

Found at i:397 original size:21 final size:21

Alignment explanation


    Indices: 371--410  Score: 64
    Period size: 21  Copynumber: 1.9  Consensus size: 21

        361 CACTCCTAAT

                                  
        371 TCACAA-CAACAGCAACAGCCC
          1 TCACAATC-ACAGCAACAGCCC

                               
        392 TCACAATCACAGCAACAGC
          1 TCACAATCACAGCAACAGC

        411 AACAGCAACA


Statistics
Matches: 18,  Mismatches: 0, Indels: 2
        0.90            0.00        0.10

Matches are distributed among these distances:
  21   17  0.94
  22    1  0.06

ACGTcount: A:0.42, C:0.40, G:0.10, T:0.07


Consensus pattern (21 bp):   
TCACAATCACAGCAACAGCCC
Done.