Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01784.F8

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2906
ACGTcount: A:0.30, C:0.16, G:0.19, T:0.35


Found at i:2822 original size:16 final size:16

Alignment explanation


    Indices: 2801--2858  Score: 55
    Period size: 16  Copynumber: 3.6  Consensus size: 16

       2791 TGGTAGAGTG

                            
       2801 GAAAGAAAATTGGAAA
          1 GAAAGAAAATTGGAAA

                  *         
       2817 GAAAGAGAATT-GAAA
          1 GAAAGAAAATTGGAAA

              **      *      
       2832 GGGTAGAAAAATGGAAA
          1 -GAAAGAAAATTGGAAA

              *       
       2849 GATAGAAAAT
          1 GAAAGAAAAT

       2859 ATAATTTTTC


Statistics
Matches: 33,  Mismatches: 7, Indels: 4
        0.75            0.16        0.09

Matches are distributed among these distances:
  15    4  0.12
  16   25  0.76
  17    4  0.12

ACGTcount: A:0.59, C:0.00, G:0.28, T:0.14


Consensus pattern (16 bp):   
GAAAGAAAATTGGAAA
Done.