Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01789.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 400

Length: 667
ACGTcount: A:0.31, C:0.11, G:0.25, T:0.33


Found at i:40 original size:26 final size:26

Alignment explanation


    Indices: 8--117  Score: 175
    Period size: 26  Copynumber: 4.2  Consensus size: 26

          1 TACAAAT

                                   *  
          8 TGATAATAGGTTAGGTAAATGTTACA
          1 TGATAATAGGTTAGGTAAATGTTTCA

                    *              *  
         34 TGATAATAAGTTAGGTAAATGTTCCA
          1 TGATAATAGGTTAGGTAAATGTTTCA

                   *                  
         60 TGATAATGGGTTAGGTAAATGTTTCA
          1 TGATAATAGGTTAGGTAAATGTTTCA

                   *                  
         86 TGATAATGGGTTAGGTAAATGTTTCA
          1 TGATAATAGGTTAGGTAAATGTTTCA

                  
        112 TGATAA
          1 TGATAA

        118 GAATTTCATG


Statistics
Matches: 79,  Mismatches: 5, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  26   79  1.00

ACGTcount: A:0.35, C:0.05, G:0.24, T:0.36


Consensus pattern (26 bp):   
TGATAATAGGTTAGGTAAATGTTTCA

Done.