Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01797.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2337
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.30


Found at i:60 original size:8 final size:7

Alignment explanation


    Indices: 33--57  Score: 50
    Period size: 7  Copynumber: 3.6  Consensus size: 7

         23 TATTGAAGGG

                   
         33 AAAACCA
          1 AAAACCA

                   
         40 AAAACCA
          1 AAAACCA

                   
         47 AAAACCA
          1 AAAACCA

                
         54 AAAA
          1 AAAA

         58 ACCTCTCCTC


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   18  1.00

ACGTcount: A:0.76, C:0.24, G:0.00, T:0.00


Consensus pattern (7 bp):   
AAAACCA
Done.