Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01804.F5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3521
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.34


Found at i:214 original size:28 final size:28

Alignment explanation


    Indices: 182--237  Score: 103
    Period size: 28  Copynumber: 2.0  Consensus size: 28

        172 AGCTATTCAT

                              *         
        182 CTGTGCTAAAGGTAATCATGAGACTATG
          1 CTGTGCTAAAGGTAATCACGAGACTATG

                                        
        210 CTGTGCTAAAGGTAATCACGAGACTATG
          1 CTGTGCTAAAGGTAATCACGAGACTATG

        238 AACATGAACT


Statistics
Matches: 27,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  28   27  1.00

ACGTcount: A:0.32, C:0.16, G:0.25, T:0.27


Consensus pattern (28 bp):   
CTGTGCTAAAGGTAATCACGAGACTATG
Done.