Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01819.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 620

Length: 1034
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32


Found at i:1027 original size:28 final size:29

Alignment explanation


    Indices: 965--1029  Score: 80
    Period size: 28  Copynumber: 2.3  Consensus size: 29

        955 GTCGATACTT

                   **          *         
        965 TATATTTACATAAATTTTGGTATATTTAA
          1 TATATTTGTATAAATTTTGATATATTTAA

              *                          
        994 T-GATTTGTATAAATTTTGATATA-TTAA
          1 TATATTTGTATAAATTTTGATATATTTAA

                     
       1021 TATATTTGT
          1 TATATTTGT

       1030 GTTTT


Statistics
Matches: 30,  Mismatches: 5, Indels: 3
        0.79            0.13        0.08

Matches are distributed among these distances:
  27    5  0.17
  28   24  0.80
  29    1  0.03

ACGTcount: A:0.35, C:0.02, G:0.09, T:0.54


Consensus pattern (29 bp):   
TATATTTGTATAAATTTTGATATATTTAA
Done.