Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01833.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 382

Length: 637
ACGTcount: A:0.36, C:0.17, G:0.27, T:0.21


Found at i:187 original size:51 final size:51

Alignment explanation


    Indices: 129--230  Score: 186
    Period size: 51  Copynumber: 2.0  Consensus size: 51

        119 GAAGAAGAGA

                                                          *    
        129 AGCACAAGGGAGAAGCTCATCACGAAGGCGGCCATGGCTATGGCGCTGCTG
          1 AGCACAAGGGAGAAGCTCATCACGAAGGCGGCCATGGCTATGGCGCCGCTG

                           *                                   
        180 AGCACAAGGGAGAAGTTCATCACGAAGGCGGCCATGGCTATGGCGCCGCTG
          1 AGCACAAGGGAGAAGCTCATCACGAAGGCGGCCATGGCTATGGCGCCGCTG

        231 CGGTCGCCGG


Statistics
Matches: 49,  Mismatches: 2, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  51   49  1.00

ACGTcount: A:0.25, C:0.25, G:0.35, T:0.14


Consensus pattern (51 bp):   
AGCACAAGGGAGAAGCTCATCACGAAGGCGGCCATGGCTATGGCGCCGCTG
Done.