Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01874.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 673

Length: 1123
ACGTcount: A:0.28, C:0.14, G:0.20, T:0.37


Found at i:991 original size:23 final size:25

Alignment explanation


    Indices: 955--1002  Score: 64
    Period size: 24  Copynumber: 2.0  Consensus size: 25

        945 GACACTCTTA

                    *                
        955 TTTAAGTTTTATTG-GAGAGATTTG
          1 TTTAAGTTGTATTGTGAGAGATTTG

                               *     
        979 TTTAA-TTGTATTGTGAGATATTTG
          1 TTTAAGTTGTATTGTGAGAGATTTG

       1003 GGAAGAGTGA


Statistics
Matches: 21,  Mismatches: 2, Indels: 2
        0.84            0.08        0.08

Matches are distributed among these distances:
  23    7  0.33
  24   14  0.67

ACGTcount: A:0.25, C:0.00, G:0.23, T:0.52


Consensus pattern (25 bp):   
TTTAAGTTGTATTGTGAGAGATTTG
Done.