Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01877.C1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2526
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31


Found at i:1231 original size:21 final size:21

Alignment explanation


    Indices: 1205--1250  Score: 92
    Period size: 21  Copynumber: 2.2  Consensus size: 21

       1195 GAAGTATAGC

                                 
       1205 AAGGAACTTATAGTTGAATCG
          1 AAGGAACTTATAGTTGAATCG

                                 
       1226 AAGGAACTTATAGTTGAATCG
          1 AAGGAACTTATAGTTGAATCG

                
       1247 AAGG
          1 AAGG

       1251 CAATGAAATA


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   25  1.00

ACGTcount: A:0.39, C:0.09, G:0.26, T:0.26


Consensus pattern (21 bp):   
AAGGAACTTATAGTTGAATCG
Done.