Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01887.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 298

Length: 498
ACGTcount: A:0.37, C:0.17, G:0.22, T:0.24


Found at i:296 original size:15 final size:15

Alignment explanation


    Indices: 272--305  Score: 50
    Period size: 15  Copynumber: 2.3  Consensus size: 15

        262 TTTAATGTTT

                 *     *   
        272 CAAACGAAATAGAAG
          1 CAAACCAAATACAAG

                           
        287 CAAACCAAATACAAG
          1 CAAACCAAATACAAG

                
        302 CAAA
          1 CAAA

        306 GTTCTTCAAT


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  15   17  1.00

ACGTcount: A:0.62, C:0.21, G:0.12, T:0.06


Consensus pattern (15 bp):   
CAAACCAAATACAAG
Done.