Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01890.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3169
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31


Found at i:256 original size:2 final size:2

Alignment explanation


    Indices: 249--298  Score: 91
    Period size: 2  Copynumber: 25.0  Consensus size: 2

        239 TTTAATTAAG

                                                                  *       
        249 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT GT CT CT
          1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT

                       
        291 CT CT CT CT
          1 CT CT CT CT

        299 TTTAACACTG


Statistics
Matches: 46,  Mismatches: 2, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
   2   46  1.00

ACGTcount: A:0.00, C:0.48, G:0.02, T:0.50


Consensus pattern (2 bp):   
CT

Done.