Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01896.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3655
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29


Found at i:664 original size:30 final size:30

Alignment explanation


    Indices: 481--666  Score: 291
    Period size: 30  Copynumber: 6.2  Consensus size: 30

        471 AGTTAGGCCA

                         *                
        481 TTTGGGCCACCAAATGGACCGCCTTCGCCT
          1 TTTGGGCCACCAAGTGGACCGCCTTCGCCT

               *  *    *                  
        511 TTTCGGTCACCCAGTGGACCGCCTTCGCCT
          1 TTTGGGCCACCAAGTGGACCGCCTTCGCCT

               * **                       
        541 TTTCGTTCACCAAGTGGACCGCCTTCGCCT
          1 TTTGGGCCACCAAGTGGACCGCCTTCGCCT

                       *                  
        571 TTTGGGCCACCGAGTGGACCGCCTTCGCCT
          1 TTTGGGCCACCAAGTGGACCGCCTTCGCCT

               *                          
        601 TTTCGGCCACCAAGTGGACCGCCTTCGCCT
          1 TTTGGGCCACCAAGTGGACCGCCTTCGCCT

                                          
        631 TTTGGGCCACCAAGTGGACCGCCTTCGCCT
          1 TTTGGGCCACCAAGTGGACCGCCTTCGCCT

                  
        661 TTTGGG
          1 TTTGGG

        667 ACTAGACCAC


Statistics
Matches: 143,  Mismatches: 13, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  30  143  1.00

ACGTcount: A:0.12, C:0.37, G:0.25, T:0.26


Consensus pattern (30 bp):   
TTTGGGCCACCAAGTGGACCGCCTTCGCCT
Done.