Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01914.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 535

Length: 892
ACGTcount: A:0.32, C:0.21, G:0.24, T:0.23


Found at i:388 original size:21 final size:21

Alignment explanation


    Indices: 359--401  Score: 68
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        349 TTCGGCTTCT

                                 
        359 GCCGCAGCTAAGAAACCAGCC
          1 GCCGCAGCTAAGAAACCAGCC

                *            *   
        380 GCCGTAGCTAAGAAACCTGCC
          1 GCCGCAGCTAAGAAACCAGCC

             
        401 G
          1 G

        402 TCGCGAAGCC


Statistics
Matches: 20,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  21   20  1.00

ACGTcount: A:0.30, C:0.35, G:0.26, T:0.09


Consensus pattern (21 bp):   
GCCGCAGCTAAGAAACCAGCC
Done.