Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01931.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 763

Length: 1272
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31


Found at i:39 original size:3 final size:3

Alignment explanation


    Indices: 31--58  Score: 56
    Period size: 3  Copynumber: 9.3  Consensus size: 3

         21 AATTGACAAA

                                                 
         31 AAG AAG AAG AAG AAG AAG AAG AAG AAG A
          1 AAG AAG AAG AAG AAG AAG AAG AAG AAG A

         59 GAACACCATG


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   25  1.00

ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00


Consensus pattern (3 bp):   
AAG

Done.