Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01938.F6

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3566
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.35


Found at i:1099 original size:6 final size:6

Alignment explanation


    Indices: 1088--1114  Score: 54
    Period size: 6  Copynumber: 4.5  Consensus size: 6

       1078 TAGTTTAGGA

                                           
       1088 TCCGAC TCCGAC TCCGAC TCCGAC TCC
          1 TCCGAC TCCGAC TCCGAC TCCGAC TCC

       1115 TAATCTGTTA


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   21  1.00

ACGTcount: A:0.15, C:0.52, G:0.15, T:0.19


Consensus pattern (6 bp):   
TCCGAC

Done.