Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01946.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4069
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.31


Found at i:3831 original size:4 final size:4

Alignment explanation


    Indices: 3818--3849  Score: 57
    Period size: 4  Copynumber: 8.2  Consensus size: 4

       3808 TAGATGGAAG

                                                     
       3818 CTTT -TTT CTTT CTTT CTTT CTTT CTTT CTTT C
          1 CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT C

       3850 GTTTTGCATC


Statistics
Matches: 27,  Mismatches: 0, Indels: 2
        0.93            0.00        0.07

Matches are distributed among these distances:
   3    3  0.11
   4   24  0.89

ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75


Consensus pattern (4 bp):   
CTTT

Done.