Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01949.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3141
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30


Found at i:801 original size:22 final size:23

Alignment explanation


    Indices: 771--819  Score: 91
    Period size: 22  Copynumber: 2.2  Consensus size: 23

        761 GGTAGCTCCG

                                   
        771 TATTACATGCTATATCTTTCCTT
          1 TATTACATGCTATATCTTTCCTT

                                   
        794 TATT-CATGCTATATCTTTCCTT
          1 TATTACATGCTATATCTTTCCTT

                
        816 TATT
          1 TATT

        820 GTTGAATACA


Statistics
Matches: 26,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
  22   22  0.85
  23    4  0.15

ACGTcount: A:0.20, C:0.20, G:0.04, T:0.55


Consensus pattern (23 bp):   
TATTACATGCTATATCTTTCCTT
Done.