Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01952.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1913
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32


Found at i:118 original size:5 final size:5

Alignment explanation


    Indices: 108--144  Score: 74
    Period size: 5  Copynumber: 7.4  Consensus size: 5

         98 AAATCATCTC

                                                        
        108 TCAGT TCAGT TCAGT TCAGT TCAGT TCAGT TCAGT TC
          1 TCAGT TCAGT TCAGT TCAGT TCAGT TCAGT TCAGT TC

        145 GTGCACTAAA


Statistics
Matches: 32,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   5   32  1.00

ACGTcount: A:0.19, C:0.22, G:0.19, T:0.41


Consensus pattern (5 bp):   
TCAGT

Done.