Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga02g00880.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 582

Length: 971
ACGTcount: A:0.33, C:0.17, G:0.21, T:0.29


Found at i:54 original size:3 final size:3

Alignment explanation


    Indices: 32--103  Score: 53
    Period size: 3  Copynumber: 25.0  Consensus size: 3

         22 CCTGGGCAGT

                     *           *           *                        * 
         32 AGA AGA AAA AG- AGA AAA AGA AGA ATA AG- AGA AGA A-A CA-A AAA
          1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA -AGA AGA

                    *                        *     
         74 AGA AGA CGA AGA AGA AGA AGA AGA ATA AGA
          1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA

        104 GAAAATGGAA


Statistics
Matches: 54,  Mismatches: 11, Indels: 8
        0.74            0.15        0.11

Matches are distributed among these distances:
   2    6  0.11
   3   48  0.89

ACGTcount: A:0.69, C:0.03, G:0.25, T:0.03


Consensus pattern (3 bp):   
AGA

Done.