Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga13g01973.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2623
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.29


Found at i:647 original size:30 final size:30

Alignment explanation


    Indices: 613--672  Score: 120
    Period size: 30  Copynumber: 2.0  Consensus size: 30

        603 GTGCTTTTAG

                                          
        613 TTGGGGCCTGTGGTTCTCTTTACTTACTTT
          1 TTGGGGCCTGTGGTTCTCTTTACTTACTTT

                                          
        643 TTGGGGCCTGTGGTTCTCTTTACTTACTTT
          1 TTGGGGCCTGTGGTTCTCTTTACTTACTTT

        673 CACATTCTCA


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  30   30  1.00

ACGTcount: A:0.07, C:0.20, G:0.23, T:0.50


Consensus pattern (30 bp):   
TTGGGGCCTGTGGTTCTCTTTACTTACTTT
Done.